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DOF PRO 5 MANUAL
DOF PRO 5 CODE

This subsection of the Sequence section indicates if the canonical sequence displayed by default in the entry is complete or status i : Complete.This entry describes 2 The current subsections and their content are listed below:More.Sequence s (2) i

The information is filed in different subsections. It also includes information pertinent to the sequence(s), including length and molecular weight. This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. PROSITE a protein domain and family database More.PROSITE i View protein in Pfam PF02701, zf-Dof, 1 hit View protein in InterPro IPR003851, Znf_Dof Integrated resource of protein families, domains and functional sites More.InterPro i Identification of Orthologs from Complete Genome Data More.OMA iĭatabase of Orthologous Groups More.OrthoDB iĭatabase for complete collections of gene phylogenies More.PhylomeDB i InParanoid: Eukaryotic Ortholog Groups More.InParanoid i The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms More.HOGENOM i Keywords - Domain i Zinc-finger Phylogenomic databasesĮvolutionary genealogy of genes: Non-supervised Orthologous Groups More.eggNOG i This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those bias i

DOF PRO 5 MANUAL

Information which has been generated by the UniProtKB automatic annotation system, without manual validation.Īutomatic assertion according to sequence analysis i This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other i This section provides information on sequence similarities with other proteins and the domain(s) present in a & Domains i Region Feature key It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed lineage iĬellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliopsida › Mesangiospermae › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis This subsection of the Names and taxonomy section contains the taxonomic hierarchical classification lineage of the source organism. This is known as the 'taxonomic identifier' or 'taxid'.More.Taxonomic identifier i

This subsection of the Names and taxonomy section shows the unique identifier assigned by the NCBI to the source organism of the protein. This subsection of the Names and taxonomy section provides information on the name(s) of the organism that is the source of the protein i Inferred from sequence or structural similarity i

DOF PRO 5 CODE

More information in the GO evidence code guide Inferred from Sequence or Structural SimilarityUsed for any analysis based on sequence alignment, structure comparison, or evaluation of sequence features such as composition.

DNA-binding transcription factor activity Source: TAIR.

The Gene Ontology (GO) project provides a set of hierarchical controlled vocabulary split into 3 categories:More.GO - Molecular function i This subsection of the Function section specifies the position(s) and type(s) of zinc fingers within the finger i Manual validated information which has been generated by the UniProtKB automatic annotation system. The nature of the metal is indicated in the 'Description' binding i This subsection of the Function section indicates at which position the protein binds a given metal ion. Both zinc finger proteins may act on a maternal switch that controls seed germination, possibly by regulating the same gene(s). The regulatory role of DOF2.5/DAG2 appears to be opposite to that of DOF3.7/DAG1.